biology/ugene: Update to 53.1
Release Notes: https://ugene.net/changelist.html
Port changes:
- Fix build on non-x86, mark IGNORE for aarch64.
- Switch to cmake, qmake is not supported anymore.
- Drop unused sqlite, renew Qt components.
- Convert to PORTDATA, use shebangfix.
Special thanks to fuz@ for testing and fixing non-x86 build!
PR: 293379
[VPlan] Allow same predecessor multiple times in the verifier. (NFC) (#192809)
IR instructions like switch lead to initial VPlans with blocks that have
the same predecessor multiple times. Allow it in the verifier.
[clang] fix profiling of pack index expressions
This replaces a few incorrect calls of VisitExpr on subcomponents,
which should have been plain `Visit` instead, because the former
just implements the commonality between all kind-specific profile
functions (marking the class kind and visiting children).
So this for example would visit a DeclRefExpr but not actually profile
any of it's properties, like the parameter declaration, so it would fail
to distinguish between DeclRefExps referencing distinct entities.
This also adds a call to record the PackIndexExpr's kind in the profile,
to avoid false positives when comparing expressions with different kinds.
net/rsync: revert to single package without Python dependency
Restore the previous setup with a single net/rsync package that includes
the rrsync script but does not depend on Python.
Users who require the rrsync script must install Python separately,
as indicated in the install message.
Bump PORTREVISION
This reverts commit fc42790ae011acedf0195c7d31b1cf63b8c02155.
This reverts commit f02bc3be718072b75bd291f81f66b7f15865f535.
PR: 286073
boot1.chrp: Specify --image-base
This is required for LLVM 22's ld.lld to avoid a build error:
ld.lld: error: section '.text' address (0x38000) is smaller than image base (0x10000000); specify --image-base
ld.lld: error: section '.rodata' address (0x3b308) is smaller than image base (0x10000000); specify --image-base
ld.lld: error: section '.data' address (0x3b610) is smaller than image base (0x10000000); specify --image-base
ld.lld: error: section '.bss' address (0x3f618) is smaller than image base (0x10000000); specify --image-base
Use 0x38000 for the image base, which is the address of the lowest
(and only) LOAD segment in the file.
Sponsored by: https://www.patreon.com/bsdivy
Differential Revision: https://reviews.freebsd.org/D56459
[clang] fix a bug matching constrained out-of-line definitions of class member functions
The method which gathered the template arguments for transforming constraints
was incorrectly skipping adding the arguments for function templates which are
class members.
This fixes that, and removes an undocumented workaround for template alias CTAD.
Also adds a test case showing #139276 causes a profiling issue with PackIndexExprs,
which for the tests added in that PR gave the false impression they were fixing the
problem, but were actually causing the implementation to be too accepting, which
masked the bug solved in this patch.
Prevent buffer overflow by checking the correct counter.
An attacker on the same layer 2 network can send rogue router
advertisements, potentially crashing slaacd.
from Maurice Hieronymus (mhi AT mailbox.org), thanks!
from florian@; OK deraadt
this is errata/7.7/039_slaacd.patch.sig
iflib: fix book keeping
iflib_txq_drain() returns the number of consumed entries. In the case
of TSO, a single entry can contain multiple TCP packets.
Reported by: Ricardo Branco, David Wolfskill
Reviewed by: gallatin
Fixes: 3fade68cfdf9 ("iflib: accurately count bytes/segments for TSO")
Sponsored by: Netflix, Inc.
Differential Revision: https://reviews.freebsd.org/D56509
Prevent buffer overflow by checking the correct counter.
An attacker on the same layer 2 network can send rogue router
advertisements, potentially crashing slaacd.
from Maurice Hieronymus (mhi AT mailbox.org), thanks!
from florian@; OK deraadt
this is errata/7.8/033_slaacd.patch.sig
[clang] fix a bug matching constrained out-of-line definitions of class member functions
The method which gathered the template arguments for transforming constraints
was incorrectly skipping adding the arguments for function templates which are
class members.
This fixes that, and removes an undocumented workaround for template alias CTAD.
Also adds a test case showing #139276 causes a profiling issue with PackIndexExprs,
which for the tests added in that PR gave the false impression they were fixing the
problem, but were actually causing the implementation to be too accepting, which
masked the bug solved in this patch.
[clang] fix a bug matching constrained out-of-line definitions of class member functions
The method which gathered the template arguments for transforming constraints
was incorrectly skipping adding the arguments for function templates which are
class members.
This fixes that, and removes an undocumented workaround for template alias CTAD.
Also adds a test case showing #139276 causes a profiling issue with PackIndexExprs,
which for the tests added in that PR gave the false impression they were fixing the
problem, but were actually causing the implementation to be too accepting, which
masked the bug solved in this patch.
tcp: Allocate t_tcpreq_info on demand
When TCP_REQUEST_TRK is enabled, the tcb grows by 600 bytes
to accommodate the t_tcpreq_info[MAX_TCP_TRK_REQ] array.
Even when the option is enabled, not every connection is using
this feature. So let's allocate it on-demand, and save 600
bytes in the common case.
Sponsored by: Netflix
Reviewed by: rrs, tuexen
Differential Revision: https://reviews.freebsd.org/D56484
[clang] fix a bug matching constrained out-of-line definitions of class member functions
The method which gathered the template arguments for transforming constraints
was incorrectly skipping adding the arguments for function templates which are
class members.
This fixes that, and removes an undocumented workaround for template alias CTAD.
Also adds a test case showing #139276 causes a profiling issue with PackIndexExprs,
which for the tests added in that PR gave the false impression they were fixing the
problem, but were actually causing the implementation to be too accepting, which
masked the bug solved in this patch.
devel/pcsc-cyberjack: update to 3.99.5final.SP17
No meaningful changelog was provided by upstream.
This version has been available in Debian for a while,
but upstream neglected to provide an official tarball
until recently.
archivers/openzl: not for 32-bit platforms
32-bit platforms are not yet supported.
Upstream is working on it.
See also: https://github.com/facebook/openzl/issues/342
Approved by: portmgr (build fix blanket)
MFH: 2026Q2
