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www/firefox: update to 125.0.2 (rc1)

Release Notes (soon):
  https://www.mozilla.org/en-US/firefox/125.0.2/releasenotes/

(cherry picked from commit 593deb72c094ef55d48447acfb14645d829c8db2)

www/firefox: update to 125.0.2 (rc1)

Release Notes (soon):
  https://www.mozilla.org/en-US/firefox/125.0.2/releasenotes/

security/clamav-lts: Update to 1.0.6

ReleaesNotes:   https://blog.clamav.net/2024/04/clamav-131-123-106-patch-versions.html
MFH:            2024Q2
(cherry picked from commit e6d40aae801a2e9ff908b0950fc8f38fddb90dde)

security/clamav: Update to 1.3.1

ReleaseNotes:   https://blog.clamav.net/2024/04/clamav-131-123-106-patch-versions.html
MFH:            2024Q2
Security:       ecafc4af-fe8a-11ee-890c-08002784c58d
(cherry picked from commit 6b4e9b37b7a7a1bac12612bf7e800c1ba322210e)

security/clamav-lts: Update to 1.0.6

ReleaesNotes:   https://blog.clamav.net/2024/04/clamav-131-123-106-patch-versions.html
MFH:            2024Q2

security/clamav: Update to 1.3.1

ReleaseNotes:   https://blog.clamav.net/2024/04/clamav-131-123-106-patch-versions.html
MFH:            2024Q2
Security:       ecafc4af-fe8a-11ee-890c-08002784c58d

security/vuxml: Document possible DoS attack valnerability in ClamAV

deskutils/calibre: Update to 7.9.0

science/py-HofstadterTools: New port: Package for analyzing the Hofstadter model of particles in the lattice

databases/duckdb: FIx most tests by correcting how OVERRIDE_GIT_DESCRIBE is passed to the build

2 tests still fail.

security/hs-cryptol: Switch to GHC 9.6

PR:             278445

science/wwplot: update 0.0.9 → 1.0.0

Reported by:    portscout

kasan: fix false-positive kasan_report upon thread reuse

In fork1(), if a thread is reused and thread_alloc_stack() is not
called, mark the reused thread's kstack pages clean in the KASAN shadow
buffer.

Sponsored by:   Juniper Networks, Inc.
MFC after:      3 days
Reviewed by:    markj
Differential Revision:  https://reviews.freebsd.org/D44875

devel/py-anytree: Update to 2.12.0

PR:             278434

devel/py-hg-evolve: Update to 11.1.3

PR:             278436

emulators/qemu: Switch CAPSTONE dependency to Capstone 5

Approved by:    bofh (maintainer)

ports-mgmt/hs-panopticum: Update to 2.0.1.0

PR:             278277

math/z3: Update to 4.13.0

lang/rizin: Update to 0.7.3

PR:             278433

bpf: Make BPF interop consistent with if_loop

The pseudo_AF_HDRCMPLT check is already being done in if_loop and
just needed to be ported over to if_ic, if_wg, if_disc, if_gif,
if_gre, if_me, if_tuntap and ng_iface.  This is needed in order to
allow these interfaces to work properly with e.g., tcpreplay.

PR:             256587
Reviewed by:    markj
MFC after:      2 weeks
Pull Request:   https://github.com/freebsd/freebsd-src/pull/876

install: Fix a compiler warning when bootstrapping

Fixes:          4336161cc9c6 ("install: Don't skip syncing in the common case.")
Reviewed by:    imp, des
Differential Revision:  https://reviews.freebsd.org/D44866

ctags: Use C99 bool instead of defining our own

Use stdbool.h definitions instead of defining non-standard ones.

Signed-off-by: Collin Funk <collin.funk1 at gmail.com>

Reviewed by:    markj
MFC after:      2 weeks
Pull Request:   https://github.com/freebsd/freebsd-src/pull/1107

tests: move atf_python/sys/ into the tests package

Reviewed by:    markj
MFC after:      1 week
Pull Request:   https://github.com/freebsd/freebsd-src/pull/1174

LinuxKPI: utsname.h add missing SPDX-License-Identifier

Reported by:    markj (2023-05-24; sorry took me a while)
MFC after:      3 days

devel/jenkins-lts: Update to 2.440.3

Security:       4ebdd56b-fe72-11ee-bc57-00e081b7aa2d
Sponsored by:   The FreeBSD Foundation

(cherry picked from commit e7aed746b65ac50a76601d3896429be92ae180a4)

devel/jenkins-lts: Update to 2.440.3

Security:       4ebdd56b-fe72-11ee-bc57-00e081b7aa2d
Sponsored by:   The FreeBSD Foundation

security/vuxml: Document Jenkins Security Advisory 2024-04-17

Sponsored by:   The FreeBSD Foundation

devel/jenkins: Update to 2.454

Sponsored by:   The FreeBSD Foundation

freebsd-update(8): Use kern.module_path

Instead of tailored configuration files to look for module_path entries.

Reported by:            kevans@
Reviewed by:            kevans, imp, zlei
Approved by:            kevans,zlei
Differential Revision:  https://reviews.freebsd.org/D44797

x11/gtklock: update to 3.0.0

Changes:        https://github.com/jovanlanik/gtklock/releases/tag/v3.0.0
Reported by:    GitHub (watch releases)