biology/sra-tools: Unbreak with extra JDK present
Cmake find_package(Java) uses the latest version found, and plist
varies depending on the version used. Set JAVE_HOME to limit
cmake's search to the version specified in the port. This is the
only way to control find_package() for Java versions.
biology/sra-tools: pin to java 17
As soon as another JDK is installed it fails the build.
This commit will make it possible to bump JAVA_DEFAULT to 21
while the maintainer looks for a solution to build this port
with other JDK versions.
PR: 292215
MAINTAINERS/CODEOWNERS: Add myself to mpr, mps and mpi3mr
Yea, I realize these are decaying, but I'm going to take a run at
automatically tagging reviews for github pull requests. I suspect that
tagging will help with the 'stale' issues with at least CODEOWNER. As
better data becomes available, especailly for contrib, I'll update
things.
Sponsored by: Netflix
powerpc: put the isync inside the TD_LOCK() checking loop
Fix a narrow window where the lock is unlocked but the checking CPU
hasn't flushed things appropriately.
Inside this window the CPU inside cpu_switch() will loop forever thinking
the destination thread is still blocked/locked even though it is not.
This manifests as the system hanging after starting all APs.
I've seen this reliably trigger in qemu-system-ppc64 running power9 pseries
guests; the more CPUs the more likely it triggers at boot.
PR: kern/292167
Differential Revision: https://reviews.freebsd.org/D54478
Reviewed by: jhibbits
MFC after: 1 week
Relnotes: yes
(cherry picked from commit 8df2e542146801fd01675e56724eaa567d04c209)
Merge commit faa5141b9be4 from file git (by Christos Zoulas):
PR/656: harry.sintonen: Fix bug in byte swapping that was caused by the change to make flags uint16_t and cont_level uint8_t.
This fixes using a magic.mgc built with a different endianness than
file(1) itself, e.g. when building powerpc64 on amd64.
PR: 292079
Fixes: ae316d1d1cff ("MFV: file 5.46.")
MFC after: 3 days
(cherry picked from commit 39047538cf5d8f26112f7b08b3c56967f70f7f94)
Remove obsolete BUGS section from zgrep(1) man page, add test
I forgot to check/update the man page with D54217. While here add
a test for multiple -e flags.
Reviewed by: markj
Approved by: markj
MFC after: 1 week
Differential Revision: https://reviews.freebsd.org/D54632
Import latest mtree from NetBSD
Merge commit '7e59b238fcf32f3d365e78ddc702ca494e1ff68d'
This commit partially reverts the previous vendor import, given that the
"type" keyword has been historically mandatory and should not be removed
by "-R all". This was clarified in the man page.
Reported by: glebius
PR: 219467
MFC after: 1 week
sysutils/edk2: update to 2025008
Patch to update EDK2 OVMF firmware package used in bhyve and some ARM
platforms from 2023 to 2025 stable release. New submodules added in
GH_TUPLE, some script for build has been moved to a bash subshell.
BHYVE notices: tiny boot speedup, a bug with crashing on CPU sensor
wmsr from HWiNFO has stopped occurring, a bug with glibc apps crashing
in Linux VMs has stopped occurring, a crash on memtest86+ with more
than 1 vCPU has stopped occurring.
No new bugs seem to have surfaced.
PR: 285554
Tested by: novel
MFH: 2025Q4
(cherry picked from commit bafbff663ba59c9c6f10acecc3c4b86dee155f43)
shells/mksh: fix crash on 16-CURRENT
Kernel now reports support for 126 signals, while the libc headers only
report 32. This mismatch caused an out-of-bounds write initialising
internal tables.
Reported by: hackee <h4ckee at proton.me>
PR: 292146
MFH: 2025Q4
(cherry picked from commit 1c257703ed4c59a485b28b17c7a1541b0c203191)
sysutils/edk2: update to 2025008
Patch to update EDK2 OVMF firmware package used in bhyve and some ARM
platforms from 2023 to 2025 stable release. New submodules added in
GH_TUPLE, some script for build has been moved to a bash subshell.
BHYVE notices: tiny boot speedup, a bug with crashing on CPU sensor
wmsr from HWiNFO has stopped occurring, a bug with glibc apps crashing
in Linux VMs has stopped occurring, a crash on memtest86+ with more
than 1 vCPU has stopped occurring.
No new bugs seem to have surfaced.
PR: 285554
Tested by: novel
MFH: 2025Q4
