math/py-numpy-stl: update to 4.0.1
numpy-stl 4.0.1
Fixed
Resolved all mypy and basedpyright findings; malformed # type:
ignore[ty:...] suppressions replaced by typing.cast or restructured code.
Replaced argparse.FileType (deprecated since Python 3.14) in the CLI
with path arguments opened after parsing; stdin/stdout - semantics unchanged.
This also fixes a latent bug where the output file was truncated at
argument-parsing time, before the input was validated.
The optional speedups were silently disabled with speedups>=2.1.0,
which moved ascii_read/ascii_write to the speedups.stl submodule.
The import now targets that submodule and the fast extra requires
speedups>=2.1.0.
Changed
CI now enforces all four type checkers (pyrefly, mypy, basedpyright, ty).
stress2: Fix script bugs in gnop6.sh, gnop7.sh and fdatasync*.sh
gnop6.sh recorded the checkfs result with "checkfs ... || s=1 && s=0",
which the shell parses as "(checkfs || s=1) && s=0", so the test passed
even when the file system check failed.
gnop7.sh only sets s when unmount or fsck_ffs fails and ends with
"exit $s". On a clean run s is unset, and the script exits with the
status of the preceding "[ $notloaded ] && gnop unload", which is 1
whenever geom_nop was already loaded, for instance by an earlier test.
fdatasync.sh and fdatasync2.sh ran "df -i $RUNDIR" before creating the
directory. With a RUNDIR that does not exist yet, df failed, the test
printed "[: -lt: unexpected operator" and the free inode check was
skipped.
Reviewed by: pho
Differential Revision: https://reviews.freebsd.org/D60136
Sponsored by: Sippy Software, Inc.
MFC after: 2 weeks
tests/sys/vfs: Fix the Linux kld check
linux and linux64 are file names, not module names. The corresponding
module names are linuxelf and linux64elf, respectively, so these tests
were always being skipped.
Fixes: b98d169d1f91 ("tests/sys/vfs: add ABI-root absolute symlink tests")
Sponsored by: The FreeBSD Foundation
devel/qt6-base: Fix with textproc/md4c installed
devel/qt6-base compiles without any problems in Poudriere. However,
in an unclean environment, it encounters problems with an already
installed textproc/md4c
PR: 298996
Approved by: makc
lockf: Do not block in vfs_busy()
A race is possible otherwise: vfs_busy() may return after an unmounted
filesystem has been removed from the global mount list. That is,
vfs_busy() will block until vfs_mount_destroy() sets MNTK_REFEXPIRE, and
at that point the mountpoint has been removed from the mountlist, so
TAILQ_FOREACH can return an invalid value.
Simply do not block if the mountpoint is being unmounted.
Reviewed by: kib
Fixes: eca39864f702 ("Add sysctl KERN_LOCKF")
MFC after: 1 week
Sponsored by: The FreeBSD Foundation
Differential Revision: https://reviews.freebsd.org/D59982
(cherry picked from commit dd16a5f53b0b2e967d20d2900f18fc320997679b)
lockf: Do not block in vfs_busy()
A race is possible otherwise: vfs_busy() may return after an unmounted
filesystem has been removed from the global mount list. That is,
vfs_busy() will block until vfs_mount_destroy() sets MNTK_REFEXPIRE, and
at that point the mountpoint has been removed from the mountlist, so
TAILQ_FOREACH can return an invalid value.
Simply do not block if the mountpoint is being unmounted.
Reviewed by: kib
Fixes: eca39864f702 ("Add sysctl KERN_LOCKF")
MFC after: 1 week
Sponsored by: The FreeBSD Foundation
Differential Revision: https://reviews.freebsd.org/D59982
(cherry picked from commit dd16a5f53b0b2e967d20d2900f18fc320997679b)
vm_page: Fix the error path in vm_page_alloc_contig_domain()
If we are inserting a run of pages into a VM object and fail at some
point due to a memory allocation failure, we have to free all of the
pages in the run. We do that by resetting some fields and calling
vm_page_free_toq() on each page; this removes the page from the object
and frees it back to the buddy allocator.
If the page is supposed to be wired, we reset the reference count, but
this was done incorrectly: the VPRC_OBJREF flag must be retained as the
page still belongs to an object. Resetting it to zero will cause a
panic in vm_page_free_prep(): vm_page_free_object_prep() will subtract
VPRC_OBJREF from the refcount, causing underflow, and
vm_page_free_prep() subsequently calls panic() if the refcount is
non-zero.
Reviewed by: alc, kib
Fixes: fee2a2fa3983 ("Change synchonization rules for vm_page reference counting.")
MFC after: 1 week
[4 lines not shown]
mac_bsdextended: reject negative rule indices in sysctl_rule()
The security.mac.bsdextended.rules.<N> node handler takes N as
`index = name[0]` (a signed int) and only checks
`index >= MAC_BSDEXTENDED_MAXRULES`. A negative index is caught on
the read branch, but the write-only add and delete
branches proceed to `rules[index]` unconditionally.
Reject `index < 0` alongside the existing upper-bound check.
Submitted by calif.io for the OpenAI Patch The Planet program
Signed-off-by: Andrew Griffiths <andrew at calif.io>
Reviewed by: markj
MFC after: 2 weeks
(cherry picked from commit 5d0b87669a91244e330a35fc973e6c60f92f6d1f)
ppp: Fix address leaks
Avoid printing timer addresses, so as to not divulge information about
the address space layout.
In ip.c, print the actual SPI instead of a pointer to the SPI in the
header buffer.
When debug logging is enabled, don't leak pointers when logging function
arguments or return values.
Reported by: Reo Shiseki
MFC after: 2 weeks
Sponsored by: The FreeBSD Foundation
(cherry picked from commit c91777f23a3b13649cdf303515ee45a04c788af3)
vm_page: Fix the error path in vm_page_alloc_contig_domain()
If we are inserting a run of pages into a VM object and fail at some
point due to a memory allocation failure, we have to free all of the
pages in the run. We do that by resetting some fields and calling
vm_page_free_toq() on each page; this removes the page from the object
and frees it back to the buddy allocator.
If the page is supposed to be wired, we reset the reference count, but
this was done incorrectly: the VPRC_OBJREF flag must be retained as the
page still belongs to an object. Resetting it to zero will cause a
panic in vm_page_free_prep(): vm_page_free_object_prep() will subtract
VPRC_OBJREF from the refcount, causing underflow, and
vm_page_free_prep() subsequently calls panic() if the refcount is
non-zero.
Reviewed by: alc, kib
Fixes: fee2a2fa3983 ("Change synchonization rules for vm_page reference counting.")
MFC after: 1 week
[4 lines not shown]
ppp: Fix address leaks
Avoid printing timer addresses, so as to not divulge information about
the address space layout.
In ip.c, print the actual SPI instead of a pointer to the SPI in the
header buffer.
When debug logging is enabled, don't leak pointers when logging function
arguments or return values.
Reported by: Reo Shiseki
MFC after: 2 weeks
Sponsored by: The FreeBSD Foundation
(cherry picked from commit c91777f23a3b13649cdf303515ee45a04c788af3)
posixshm: Fix a double unlock in shm_partial_page_invalidate()
For some reason, shm_partial_page_invalidate() unlocks the object upon
an error, but its callers don't expect this. Don't do any special error
handling. Keep the subroutine anyway since the name is a bit clearer
than vm_page_grab_zero_partial().
While here, normalize the object pointer used for locking in
shm_deallocate().
Reviewed by: kib
Fixes: 454bc887f250 ("uipc_shm: Implements fspacectl(2) support")
MFC after: 1 week
Sponsored by: The FreeBSD Foundation
Differential Revision: https://reviews.freebsd.org/D59877
(cherry picked from commit ba974faaf30b74472acc4f0dc5853a22d43951f2)
mac_bsdextended: reject negative rule indices in sysctl_rule()
The security.mac.bsdextended.rules.<N> node handler takes N as
`index = name[0]` (a signed int) and only checks
`index >= MAC_BSDEXTENDED_MAXRULES`. A negative index is caught on
the read branch, but the write-only add and delete
branches proceed to `rules[index]` unconditionally.
Reject `index < 0` alongside the existing upper-bound check.
Submitted by calif.io for the OpenAI Patch The Planet program
Signed-off-by: Andrew Griffiths <andrew at calif.io>
Reviewed by: markj
MFC after: 2 weeks
(cherry picked from commit 5d0b87669a91244e330a35fc973e6c60f92f6d1f)
