FreeBSD/ports 3bad6a1 — devel/R-cran-multicool pkg-plist Makefile, math/R-cran-polycor pkg-plist Makefile

*/R-cran-*: Fix pkg-plist issue after R-4.6.0

R 4.6.0 started installing README.md files with HTML help.

Reviewed by:    thierry
Sponsored by:   The FreeBSD Foundation
Differential Revision:  https://reviews.freebsd.org/D60844
DeltaFile
+1-0math/R-cran-pracma/pkg-plist
+1-0math/R-cran-pracma/Makefile
+1-0math/R-cran-polycor/pkg-plist
+1-0math/R-cran-polycor/Makefile
+1-0devel/R-cran-multicool/pkg-plist
+1-0devel/R-cran-multicool/Makefile
+6-06 files

FreeBSD/ports 32e18a3 — converters/hs-dhall-yaml Makefile.cabal Makefile

converters/hs-dhall-yaml: Improve port

* Add WWW for Hackage
* Clarify LICENSE
* Add LICENSE_FILE

Approved by:            haskell@ (alven@)
DeltaFile
+255-263converters/hs-dhall-yaml/distinfo
+8-129converters/hs-dhall-yaml/Makefile
+126-0converters/hs-dhall-yaml/Makefile.cabal
+389-3923 files

FreeBSD/ports 45647b6 — converters/hs-dhall-json Makefile.cabal Makefile

converters/hs-dhall-json: Improve port

* Add WWW for Hackage
* Add LICENSE_FILE

Approved by:            haskell@ (alven@)
DeltaFile
+245-257converters/hs-dhall-json/distinfo
+6-125converters/hs-dhall-json/Makefile
+123-0converters/hs-dhall-json/Makefile.cabal
+374-3823 files

FreeBSD/ports 7c60816 — converters/hs-dhall-bash Makefile.cabal Makefile

converters/hs-dhall-bash: Switch GHC 9.6 => 9.12

* Add WWW for Hackage
* Add LICENSE_FILE

Approved by:            haskell@ (alven@)
DeltaFile
+293-299converters/hs-dhall-bash/distinfo
+7-131converters/hs-dhall-bash/Makefile
+134-0converters/hs-dhall-bash/Makefile.cabal
+434-4303 files

FreeBSD/ports 807e152 — deskutils/calibre Makefile

deskutils/calibre: Add missing dependencies

Some runtime python dependencies are missing from the port, causing
plugin failures.

PR:             299452
MFH:            2026Q4

(cherry picked from commit af1be921a15f35afdde6eec7bb416f74295cd34f)
DeltaFile
+51-1deskutils/calibre/Makefile
+51-11 files

FreeBSD/ports af1be92 — deskutils/calibre Makefile

deskutils/calibre: Add missing dependencies

Some runtime python dependencies are missing from the port, causing
plugin failures.

PR:             299452
MFH:            2026Q4
DeltaFile
+51-1deskutils/calibre/Makefile
+51-11 files

FreeBSD/ports 99fef1b — science/py-MDAnalysis Makefile

science/py-MDAnalysis: correct dependencies

Some dependencies were missing.

PR:     299526
DeltaFile
+18-11science/py-MDAnalysis/Makefile
+18-111 files

FreeBSD/ports 41e394e — deskutils/joplin-desktop Makefile, deskutils/podman-desktop Makefile

*/*: Bump port revision after electron42 update (f67c76ea6418)
DeltaFile
+1-1net-im/deltachat-desktop/Makefile
+1-1graphics/drawio/Makefile
+1-1deskutils/podman-desktop/Makefile
+1-1deskutils/joplin-desktop/Makefile
+4-44 files

FreeBSD/ports f67c76e — devel/electron42/files patch-electron_spec_chromium.spec.ts patch-electron_spec_api-desktop-capturer.spec.ts, devel/electron42/files/packagejsons yarn.lock

devel/electron42: Update to 42.11.15

Changelog: https://github.com/electron/electron/releases/tag/v42.11.15

Reported by:    GitHub (watch releases)
DeltaFile
+3-119devel/electron42/files/packagejsons/yarn.lock
+39-39devel/electron42/files/patch-electron_spec_api-app.spec.ts
+35-35devel/electron42/files/patch-electron_spec_api-crash-reporter.spec.ts
+31-31devel/electron42/files/patch-electron_spec_api-browser-window.spec.ts
+21-21devel/electron42/files/patch-electron_spec_api-desktop-capturer.spec.ts
+13-13devel/electron42/files/patch-electron_spec_chromium.spec.ts
+142-25824 files not shown
+244-36830 files

FreeBSD/ports a4679ca — biology/igv distinfo Makefile, biology/igv/files patch-build.gradle

biology/igv: update 2.16.0 → 2.19.8
DeltaFile
+79-64biology/igv/pkg-plist
+24-14biology/igv/Makefile
+25-0biology/igv/files/patch-build.gradle
+7-7biology/igv/distinfo
+135-854 files

FreeBSD/ports 4014bdc — audio/polyphone Makefile

audio/polyphone: fix build by adding alsa dependency

It is now required after rtmidi supports ALSA.
DeltaFile
+4-1audio/polyphone/Makefile
+4-11 files

FreeBSD/ports 18e71b1 — math/octave-forge-statistics Makefile distinfo

math/octave-forge-statistics: Update to 2.0.1.
DeltaFile
+3-3math/octave-forge-statistics/distinfo
+1-1math/octave-forge-statistics/Makefile
+4-42 files

FreeBSD/ports ccfc18e — www/nginx-module-lua-stream Makefile distinfo, www/nginx-module-lua-stream/files patch-src_ngx__stream__lua__ssl__client__helloby.c patch-src_ngx__stream__lua__ssl__certby.c

www/nginx-module-lua-stream: Update to 0.0.19rc4

lua-resty-core 0.1.34rc3 requires exactly this version; with 0.0.17 an nginx
that loads the module refuses to start.  Three of the four local patches are
upstream now.

Sponsored by:   Netzkommune GmbH
DeltaFile
+0-20www/nginx-module-lua-stream/files/patch-src_ngx__stream__lua__time.c
+3-12www/nginx-module-lua-stream/files/patch-src_ngx__stream__lua__module.c
+0-11www/nginx-module-lua-stream/files/patch-src_ngx__stream__lua__ssl__client__helloby.c
+0-11www/nginx-module-lua-stream/files/patch-src_ngx__stream__lua__ssl__certby.c
+3-3www/nginx-module-lua-stream/distinfo
+1-2www/nginx-module-lua-stream/Makefile
+7-591 files not shown
+9-597 files

FreeBSD/ports bd40198 — biology/artemis distinfo Makefile

biology/artemis: update 17.0.1-11 → 18.2.0
DeltaFile
+5-80biology/artemis/pkg-plist
+52-14biology/artemis/Makefile
+5-3biology/artemis/distinfo
+62-973 files

FreeBSD/ports 3ef97ac — science/cdk distinfo Makefile

science/cdk: update 2.7.1 → 2.13
DeltaFile
+21-8science/cdk/Makefile
+5-5science/cdk/distinfo
+26-132 files

FreeBSD/ports 930a325 — games/lizzie distinfo Makefile

games/lizzie: update 0.6-105 → 0.7.4
DeltaFile
+14-13games/lizzie/Makefile
+5-5games/lizzie/distinfo
+19-182 files

FreeBSD/ports 0f0a7c2 — biology/figtree distinfo Makefile

biology/figtree: update 1.4.4-14 → 1.4.5.p.6
DeltaFile
+5-5biology/figtree/Makefile
+3-3biology/figtree/distinfo
+8-82 files

FreeBSD/ports ab18326 — audio/nyquist pkg-plist distinfo

audio/nyquist: update 3.23 → 3.24
DeltaFile
+10-3audio/nyquist/Makefile
+3-3audio/nyquist/distinfo
+1-0audio/nyquist/pkg-plist
+14-63 files

FreeBSD/ports 9e69532 — security/vuxml/vuln 2026.xml

www/drupal1[01]: remote code execution

CVE-2026-108097

https://www.drupal.org/sa-core-2026-014

PR:             299559
Reported by:    ps.ports at smyrak.com
DeltaFile
+45-0security/vuxml/vuln/2026.xml
+45-01 files

FreeBSD/ports da70d2b — sysutils/treemd Makefile Makefile.crates

sysutils/treemd: Update to 0.10.0

ChangeLog:

1. https://github.com/Epistates/treemd/releases/tag/v0.10.0

Reported by:    "github-actions[bot]" <notifications at github.com>
DeltaFile
+283-241sysutils/treemd/distinfo
+140-119sysutils/treemd/Makefile.crates
+2-2sysutils/treemd/Makefile
+425-3623 files

FreeBSD/ports 7617773 — devel/py-virtualenv distinfo Makefile

devel/py-virtualenv: Update to 21.14.11

ChangeLog:

1. https://github.com/pypa/virtualenv/releases/tag/21.14.9
2. https://github.com/pypa/virtualenv/releases/tag/21.14.10
3. https://github.com/pypa/virtualenv/releases/tag/21.14.11

Reported by:    "github-actions[bot]" <notifications at github.com>
DeltaFile
+3-3devel/py-virtualenv/distinfo
+3-3devel/py-virtualenv/Makefile
+6-62 files

FreeBSD/ports 5967291 — editors/encryptpad distinfo Makefile

editors/encryptpad: Update to 0.6.0.0

ChangeLog:      https://github.com/evpo/EncryptPad/blob/v0.6.0.0/CHANGES.md
MFH:            2026Q4
(cherry picked from commit a595abd8037fdab0781f340e7c397b9aa8555822)
DeltaFile
+3-8editors/encryptpad/Makefile
+3-3editors/encryptpad/distinfo
+6-112 files

FreeBSD/ports 177c70c — graphics/phototonic Makefile distinfo

graphics/phototonic: Update to 3.2.95 (3.3 beta)

ChangeLog: https://github.com/luebking/phototonic/releases/tag/v3.2.95
DeltaFile
+3-3graphics/phototonic/distinfo
+1-1graphics/phototonic/Makefile
+4-42 files

FreeBSD/ports a595abd — editors/encryptpad distinfo Makefile

editors/encryptpad: Update to 0.6.0.0

ChangeLog:      https://github.com/evpo/EncryptPad/blob/v0.6.0.0/CHANGES.md
MFH:            2026Q4
DeltaFile
+3-8editors/encryptpad/Makefile
+3-3editors/encryptpad/distinfo
+6-112 files

FreeBSD/ports aed6e51 — sysutils/gomplate Makefile distinfo

sysutils/gomplate: Update to 5.3.0

ChangeLog: https://github.com/hairyhenderson/gomplate/releases/tag/v5.3.0
DeltaFile
+5-5sysutils/gomplate/distinfo
+1-2sysutils/gomplate/Makefile
+6-72 files

FreeBSD/ports 589345e — textproc/R-cran-readxl Makefile distinfo

textproc/R-cran-readxl: Update to 1.6.0

ChangeLog: https://cran.r-project.org/web/packages/readxl/index.html
DeltaFile
+3-3textproc/R-cran-readxl/distinfo
+1-1textproc/R-cran-readxl/Makefile
+4-42 files

FreeBSD/ports c1aaa6e — math/R-cran-RcppArmadillo Makefile distinfo

math/R-cran-RcppArmadillo: Update to 15.6.2-1

ChangeLog: https://cran.r-project.org/web/packages/RcppArmadillo/news.html
DeltaFile
+3-3math/R-cran-RcppArmadillo/distinfo
+1-1math/R-cran-RcppArmadillo/Makefile
+4-42 files

FreeBSD/ports c61f36b — devel/R-cran-future.apply Makefile distinfo

devel/R-cran-future.apply: Update to 1.21.0

ChangeLog: https://cran.r-project.org/web/packages/future.apply/news/news.html
DeltaFile
+3-3devel/R-cran-future.apply/distinfo
+2-2devel/R-cran-future.apply/Makefile
+5-52 files

FreeBSD/ports 32a49ae — devel/py-pysimdjson distinfo Makefile

devel/py-pysimdjson: Fix build with Python 3.13

The PyPI sdist ships csimdjson.cpp generated by Cython 3.0.2, which
fails to build with Python 3.13 (_PyLong_AsByteArray(),
_PyGen_SetStopIterationValue()), and does not include csimdjson.pyx
to rebuild it from.  Fetch the v6.0.2 tag from GitHub, which has the
same setup.py and bundled simdjson plus the .pyx, and let setup.py run
lang/cython (BUILD_WITH_CYTHON=1 FORCE_REBUILD=1).

While here, add concurrent to USE_PYTHON and fix portlint warnings.

PR:             299530
DeltaFile
+11-4devel/py-pysimdjson/Makefile
+3-3devel/py-pysimdjson/distinfo
+14-72 files

FreeBSD/ports 975217e — cad/camotics/files patch-src_python.cpp

cad/camotics: Fix build with Python 3.13

PyEval_ThreadsInitialized() was removed in Python 3.13.  It and
PyEval_InitThreads() have been no-ops since Python 3.9, so only call
them on older versions.

While here, document the patches.

PR:             299529
DeltaFile
+20-0cad/camotics/files/patch-src_python.cpp
+20-01 files