filesystems/tclvfs: add PORTEPOCH
The last version bump went back in time, 1.5.0 < 20080503_1.
While at it, use tabs instead of spaces after variable names.
biology/diamond: Update to 2.2.5 and fix deepclust crash
Initialize the seed_only member in the Hsp constructor that takes an
ApproxHsp. deepclust builds Hsps through this constructor for its
approximate alignments, so seed_only was left uninitialized. When it
evaluated to true, the SEED_ONLY flag was set on an otherwise
full-length intermediate output record. The multiblock join later
parsed that record as seed-only, stopped four bytes short, and aborted
with "Unexpected end of file", failing the deepclust-multiblock
regression test.
On Linux, the uninitialized member consistently evaluated to false,
masking the bug. On FreeBSD, it evaluated to true, and triggered the
crash.
Release notes: https://github.com/bbuchfink/diamond/releases/tag/v2.2.5
Sponsored by: The FreeBSD Foundation
x11-fonts/nerd-fonts: Update to 3.5.0
Upstream renamed the D2Coding font to D2Koding due to license reasons.
Consequently, the x11-fonts/nerd-fonts-d2coding subport has moved to
x11-fonts/nerd-fonts-d2koding accompanied by an entry in the MOVED file.
Added subports:
- x11-fonts/nerd-fonts-annotationmono
- x11-fonts/nerd-fonts-googlesanscode
Changed licenses:
- x11-fonts/nerd-fonts-agave (MIT -> OFL11)
- x11-fonts/nerd-fonts-arimo (APACHE20 -> OFL11)
- x11-fonts/nerd-fonts-cousine (APACHE20 -> OFL11)
Changelog:
https://github.com/ryanoasis/nerd-fonts/releases/tag/v3.5.0
PR: 297246
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