FreeBSD/ports 08eb51dbiology/vsearch distinfo Makefile

biology/vsearch: Update to 2.30.6

Fix regression introduced in 2.30.1
Changes: https://github.com/torognes/vsearch/releases

Reported by:    portscout
DeltaFile
+3-3biology/vsearch/distinfo
+1-1biology/vsearch/Makefile
+4-42 files

FreeBSD/ports a12be08misc/freebsd-doc-all Makefile, misc/freebsd-doc-en distinfo pkg-plist

misc/freebsd-doc-*: Update to rev. f84767f from FreeBSD docset

Approved by:    doceng (implicit)
DeltaFile
+3-3misc/freebsd-doc-en/distinfo
+3-0misc/freebsd-doc-en/pkg-plist
+1-1misc/freebsd-doc-en/Makefile
+1-1misc/freebsd-doc-all/Makefile
+2-0misc/freebsd-doc-nl/pkg-plist
+10-55 files

FreeBSD/ports 6df3d90graphics/dcmtk Makefile pkg-plist

graphics/dcmtk: Add unversioned link to DATADIR

share/dcmtk-x.y.z -> share/dcmtk
Prevents dependent ports and other tools that require access to DCMTK
dictionaries from breaking every time the dcmtk version changes.

PR:             293668
Approved by:    (blanket, prevent consumer breakage)
DeltaFile
+5-0graphics/dcmtk/Makefile
+1-0graphics/dcmtk/pkg-plist
+6-02 files

FreeBSD/ports ad61804java/openjdk25 Makefile, java/openjdk26 Makefile

java/openjdk: Fix pkgsuffix for jre builds

java/openjdk25 and openjdk26 would use the same pkgsuffix when building
the jre FLAVOR, making the package names clash.

Reported by:    Antoine Brodin <antoine at freebsd.org>
Reviewed by:    fuz
Approved by:    fuz
Sponsored by:   The FreeBSD Foundation
Differential Revision:  https://reviews.freebsd.org/D56123
DeltaFile
+2-2java/openjdk25/Makefile
+2-1java/openjdk26/Makefile
+4-32 files

FreeBSD/ports c1753addevel/R-cran-tinytest distinfo Makefile

devel/R-cran-tinytest: Update to 1.4.3

- Update WWW to the official CRAN page, as it provides more comprehensive
  documentation and metadata than the GitHub repository.

ChangeLog: https://cran.r-project.org/web/packages/tinytest/NEWS
DeltaFile
+3-3devel/R-cran-tinytest/distinfo
+2-3devel/R-cran-tinytest/Makefile
+5-62 files

FreeBSD/ports e317834math/R-cran-terra distinfo Makefile, math/R-cran-terra/files patch-fix-tests

math/R-cran-terra: Update to 1.9-11

Mark port as TESTING_UNSAFE

ChangeLog: https://cran.r-project.org/web/packages/terra/news/news.html
DeltaFile
+0-80math/R-cran-terra/files/patch-fix-tests
+3-3math/R-cran-terra/distinfo
+2-2math/R-cran-terra/Makefile
+5-853 files

FreeBSD/ports ad4817etextproc/R-cran-rmarkdown distinfo Makefile

textproc/R-cran-rmarkdown: Update to 2.31

ChangeLog: https://cran.r-project.org/web/packages/rmarkdown/news/news.html
DeltaFile
+3-3textproc/R-cran-rmarkdown/distinfo
+1-1textproc/R-cran-rmarkdown/Makefile
+4-42 files

FreeBSD/ports d04395cdevel/aws-c-s3 distinfo Makefile

devel/aws-c-s3: Update to 0.12.0

ChangeLog: https://github.com/awslabs/aws-c-s3/releases/tag/v0.12.0
DeltaFile
+3-3devel/aws-c-s3/distinfo
+1-1devel/aws-c-s3/Makefile
+4-42 files

FreeBSD/ports 640defedevel/aws-c-event-stream distinfo Makefile

devel/aws-c-event-stream: Update to 0.7.0

ChangeLog:
        https://github.com/awslabs/aws-c-event-stream/releases/tag/v0.7.0
        https://github.com/awslabs/aws-c-event-stream/releases/tag/v0.6.1
DeltaFile
+3-3devel/aws-c-event-stream/distinfo
+1-1devel/aws-c-event-stream/Makefile
+4-42 files

FreeBSD/ports 35a04f2devel/aws-crt-cpp distinfo Makefile

devel/aws-crt-cpp: Update to 0.38.1

ChangeLog:
        https://github.com/awslabs/aws-crt-cpp/releases/tag/v0.38.1
        https://github.com/awslabs/aws-crt-cpp/releases/tag/v0.38.0
DeltaFile
+3-3devel/aws-crt-cpp/distinfo
+1-1devel/aws-crt-cpp/Makefile
+4-42 files

FreeBSD/ports 48437bddevel/R-cran-mlbench distinfo Makefile

devel/R-cran-mlbench: Update to 2.1-8

ChangeLog: https://cran.r-project.org/web/packages/mlbench/NEWS
DeltaFile
+3-3devel/R-cran-mlbench/distinfo
+1-1devel/R-cran-mlbench/Makefile
+4-42 files

FreeBSD/ports 13a03e5devel/aws-c-http distinfo Makefile

devel/aws-c-http: Update to 0.10.13

ChangeLog: https://github.com/awslabs/aws-c-http/releases/tag/v0.10.13
DeltaFile
+3-3devel/aws-c-http/distinfo
+1-1devel/aws-c-http/Makefile
+4-42 files

FreeBSD/ports 75ce79fdatabases/sabiql distinfo Makefile

databases/sabiql: Update to 1.9.1

ChangeLog:      https://github.com/riii111/sabiql/releases/tag/v1.9.1
Reported by:    riii111 <notifications at github.com>
DeltaFile
+3-3databases/sabiql/distinfo
+1-1databases/sabiql/Makefile
+4-42 files

FreeBSD/ports 891ee63math/lean4 distinfo pkg-plist

math/lean4: update 4.29.0-rc2 → 4.29.0
DeltaFile
+3-3math/lean4/distinfo
+6-0math/lean4/pkg-plist
+2-1math/lean4/Makefile
+11-43 files

FreeBSD/ports 37f74b0devel/py-sqlfluff distinfo Makefile

devel/py-sqlfluff: Update to 4.1.0
DeltaFile
+3-3devel/py-sqlfluff/distinfo
+1-1devel/py-sqlfluff/Makefile
+4-42 files

FreeBSD/ports 938ab55audio/waves distinfo, audio/waves/files patch-internal_lastfm_auth.go patch-internal_notify_stub.go

audio/waves: Update to 0.1.43

- Remove all patches (now included upstream)

ChangeLog:      https://github.com/llehouerou/waves/releases/tag/v0.1.43
DeltaFile
+0-11audio/waves/files/patch-internal_lastfm_auth.go
+5-5audio/waves/distinfo
+0-8audio/waves/files/patch-internal_notify_stub.go
+0-8audio/waves/files/patch-internal_notify_dbus__test.go
+0-8audio/waves/files/patch-internal_notify_dbus.go
+0-8audio/waves/files/patch-internal_notify_albumart__test.go
+5-487 files not shown
+7-9813 files

FreeBSD/ports 05eb48amisc/claude-code pkg-plist distinfo, misc/claude-code/files package-lock.json

misc/claude-code: update 2.1.84 → 2.1.86
DeltaFile
+4-4misc/claude-code/files/package-lock.json
+0-7misc/claude-code/pkg-plist
+3-3misc/claude-code/distinfo
+1-1misc/claude-code/Makefile
+8-154 files

FreeBSD/ports d5e6a33textproc/jaq distinfo Makefile

textproc/jaq: update 2.3.0 → 3.0.0
DeltaFile
+133-115textproc/jaq/distinfo
+66-58textproc/jaq/Makefile
+199-1732 files

FreeBSD/ports be6654bshells/atuin distinfo Makefile

shells/atuin: update 18.12.0 → 18.13.6
DeltaFile
+395-317shells/atuin/distinfo
+198-160shells/atuin/Makefile
+593-4772 files

FreeBSD/ports f28b295textproc Makefile, textproc/jsongrep distinfo Makefile

textproc/jsongrep: New port: Query language over JSON documents
DeltaFile
+319-0textproc/jsongrep/distinfo
+182-0textproc/jsongrep/Makefile
+11-0textproc/jsongrep/pkg-descr
+1-0textproc/Makefile
+513-04 files

FreeBSD/ports ff4dcdasysutils/mise distinfo Makefile

sysutils/mise: update 2026.3.7 → 2026.3.17
DeltaFile
+11-13sysutils/mise/distinfo
+6-7sysutils/mise/Makefile
+17-202 files

FreeBSD/ports f0cfd6awww/py-primp distinfo Makefile.crates

www/py-primp: update 1.1.3 → 1.2.0
DeltaFile
+97-147www/py-primp/distinfo
+47-72www/py-primp/Makefile.crates
+1-2www/py-primp/Makefile
+145-2213 files

FreeBSD/src 6cc99balib/libc/gen dup3.3, lib/libsys dup.2

dup(2): document the handling of filedescriptor flags

Reviewed by:    markj
Sponsored by:   The FreeBSD Foundation
MFC after:      3 days
Differential revision:  https://reviews.freebsd.org/D56121
DeltaFile
+4-1lib/libsys/dup.2
+2-0lib/libc/gen/dup3.3
+6-12 files

FreeBSD/src c8d40bfusr.bin/diff pr.c

diff: use O_CLOEXEC on pipes

This only simplifies the code, no functional changes expected

MFC After:      1 week
DeltaFile
+2-5usr.bin/diff/pr.c
+2-51 files

FreeBSD/src 945e60eusr.bin/diff3 diff3.c

diff3: set O_CLOEXEC on pipes

This avoid leaking pipe fd in children and simplifies the code

MFC After:      1 week
Reviewed by:    kib
Differential Revision:  https://reviews.freebsd.org/D56120
DeltaFile
+2-6usr.bin/diff3/diff3.c
+2-61 files

FreeBSD/ports 9891fbdmath/R-cran-psych distinfo Makefile

math/R-cran-psych: Update to 2.6.3

Changelog: https://cran.r-project.org/web/packages/psych/news.html
DeltaFile
+3-3math/R-cran-psych/distinfo
+1-1math/R-cran-psych/Makefile
+4-42 files

FreeBSD/src 7b6be00sys/dev/hyperv/vmbus/x86 hyperv_reg.h, sys/x86/x86 local_apic.c

Hyper-V: Detect Extended Destination ID support

Hyper-V advertises support for the Extended Destination ID standard via
bit 2 of the value returned in the EAX register when the hypervisor
stack properties are queried via CPUID.

This is based on a commit to the Linux kernel, as there does not seem
to be any other documentation of this feature.

Reviewed by:    Souradeep Chakrabarti
MFC after:      3 weeks
Sponsored by:   Amazon
Differential Revision:  https://reviews.freebsd.org/D55432
DeltaFile
+9-0sys/x86/x86/local_apic.c
+6-0sys/dev/hyperv/vmbus/x86/hyperv_reg.h
+15-02 files

FreeBSD/src 8dd9a0dsys/x86/x86 local_apic.c

Bhyve: Detect Extended Destination ID support

Bhyve advertises support for the Extended Destination ID standard via
bit 0 (aka CPUID_BHYVE_FEAT_EXT_DEST_ID) of the value returned in the
EAX register when Bhyve features are queried via CPUID.

MFC after:      3 weeks
Sponsored by:   Amazon
Differential Revision:  https://reviews.freebsd.org/D55431
DeltaFile
+8-0sys/x86/x86/local_apic.c
+8-01 files

FreeBSD/src 49b6254sys/amd64/vmm x86.c, sys/x86/include bhyve.h

vmm: Move defines from x86.c to x86/bhyve.h

The values CPUID_BHYVE_FEATURES and CPUID_BHYVE_FEAT_EXT_DEST_ID are
useful for guests, not just hosts; so they belong in a header file in
sys/x86/include rather than simply in the .c file implementing the
bhyve host side.

The original addition of these defines took place without adding a
copyright statement, but since I'm moving them into a new file I've
added the original author's standard copyright (Amazon).

MFC after:      3 weeks
Fixes:  313a68ea20b4 ("bhyve: Add CPUID_BHYVE_FEATURES leaf")
Sponsored by:   Amazon
Differential Revision:  https://reviews.freebsd.org/D55430
DeltaFile
+35-0sys/x86/include/bhyve.h
+1-4sys/amd64/vmm/x86.c
+36-42 files

FreeBSD/src 9b18ba2sys/x86/x86 local_apic.c

Xen: Detect Extended Destination ID support

Xen advertises support for the Extended Destination ID standard via
bit 5 (aka XEN_HVM_CPUID_EXT_DEST_ID) of the value returned in the
EAX register when Xen features are queried via CPUID.

MFC after:      3 weeks
Sponsored by:   Amazon
Differential Revision:  https://reviews.freebsd.org/D55429
DeltaFile
+6-0sys/x86/x86/local_apic.c
+6-01 files